Description

The SSRclouds package uses the Pclouds approach to find SSR-related clouds and detect SSR repeats in genomes as described in the reference below.

Downloading

Too big supplementary materials available: 1) false positive rate files (20 KB) 2) negative control simulator (35 KB) 3) poly A human annotations (140 MB) 4) poly AC human annotations (80 MB) 5) all human annotations gap 0 (368 MB) 6) all human annotations gap 5 (362 MB) 7) all human annotations gap 30 (354 MB) .

Manual

The manual included comes with the paper release and is available here (link here upon publication).

Credits

Original concept by DD Pollock and JA Shortt; most programming by JA Shortt

References

Jonathan A. Shortt, Robert P. Ruggiero, Corey Cox1, Aaron C. Wacholder, and David D. Pollock, Finding and extending ancient simple sequence repeat-derived regions in the human genome, Mobile DNA 2020 (in review)